Index

A

arctic_ai.cli module arctic_ai.cnn_prediction module arctic_ai.detection_workflows.follicle_detection module arctic_ai.detection_workflows.nuclei_cli module arctic_ai.detection_workflows.nuclei_gnn module arctic_ai.detection_workflows.predict_detection module arctic_ai.detection_workflows.utils module arctic_ai.generate_graph module

arctic_ai.gnn_prediction module arctic_ai.image_stitch module arctic_ai.model_3d module arctic_ai.preprocessing module arctic_ai.scale_workflow module arctic_ai.tumor_map module arctic_ai.utils module arctic_ai.workflow module

C

cnn_predict() (arctic_ai.cli.Commands method) Commands (class in arctic_ai.cli) create() (arctic_ai.image_stitch.Numpy2DZI method)

create_graph_data() (in module arctic_ai.generate_graph) CustomDataset (class in arctic_ai.cnn_prediction) CustomDatasetOld (class in arctic_ai.cnn_prediction)

D

detect_from_patches() (in module arctic_ai.detection_workflows.nuclei_cli)

E

extract_nuclei_patch() (in module arctic_ai.detection_workflows.nuclei_cli)

F

forward() (arctic_ai.detection_workflows.nuclei_gnn.GCNFeatures method) (arctic_ai.detection_workflows.nuclei_gnn.GCNNet method) (arctic_ai.gnn_prediction.GCNFeatures method) (arctic_ai.gnn_prediction.GCNNet method)

G

GCNFeatures (class in arctic_ai.detection_workflows.nuclei_gnn) (class in arctic_ai.gnn_prediction) GCNNet (class in arctic_ai.detection_workflows.nuclei_gnn) (class in arctic_ai.gnn_prediction)

generate_embeddings() (in module arctic_ai.cnn_prediction) get_diverse_patches() (in module arctic_ai.detection_workflows.nuclei_cli) gnn_predict() (arctic_ai.cli.Commands method) graph_creation() (arctic_ai.cli.Commands method)

I

im2dzi() (arctic_ai.cli.Commands method)

ink_detect() (arctic_ai.cli.Commands method)

M

module arctic_ai.cli arctic_ai.cnn_prediction arctic_ai.detection_workflows.follicle_detection arctic_ai.detection_workflows.nuclei_cli arctic_ai.detection_workflows.nuclei_gnn arctic_ai.detection_workflows.predict_detection arctic_ai.detection_workflows.utils arctic_ai.generate_graph arctic_ai.gnn_prediction arctic_ai.image_stitch arctic_ai.model_3d arctic_ai.preprocessing arctic_ai.scale_workflow arctic_ai.tumor_map arctic_ai.utils arctic_ai.workflow

N

None (arctic_ai.cli.Commands attribute)

nuclei_predict() (arctic_ai.cli.Commands method) Numpy2DZI (class in arctic_ai.image_stitch)

P

predict() (in module arctic_ai.gnn_prediction) predict_hair_follicles() (in module arctic_ai.detection_workflows.follicle_detection)

preprocess() (arctic_ai.cli.Commands method) (in module arctic_ai.preprocessing) prettify() (in module arctic_ai.detection_workflows.nuclei_cli)

R

run() (in module arctic_ai.detection_workflows.nuclei_cli) run_for_patch_with_cnn() (in module arctic_ai.detection_workflows.nuclei_cli) run_parallel() (arctic_ai.cli.Commands method) (in module arctic_ai.scale_workflow)

run_series() (arctic_ai.cli.Commands method) run_workflow_series() (in module arctic_ai.workflow)

T

tif2npy() (arctic_ai.cli.Commands method)